I googled the question, the best answer is on this page

You can do this by using our Table Browser. If you’re unfamiliar with the Table Browser, please see the User’s Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.

  1. From http://genome.ucsc.edu, select “Tables” from the blue navigation bar at the top of the screen.
  2. Select the following options:
    Clade: Mammal
    Genome: Human
    Assembly: Feb. 2009 (GRCh37/hg19)
    Group: Genes and Gene Prediction Tracks
    Track: RefSeq Genes
    Table: refGene
  3. If you have a list of RefSeq IDs that you want annotated, on the “identifiers” line, click the “paste list” or “upload list” button to use your list of identifiers. If you want the annotation for all genes in a specific region, on the “region” line, you can click “genome” for the entire genome, “position” to define a single specific region or “define regions” to define multiple regions.
  4. Set “output” to “all fields from selected table” to list all fields in your output or to “selected fields from primary or related tables” to select only certain fields in your output
  5. Click the “get output” button (if you selected “selected fields from primary or related tables” in step 4, the next screen will allow you to select the fields you want in your output)

Last week I attend to the CSH Asia 2012 conference:High Throughput Biology- Genomics & Epigenomics.

This is the first time I go to a such big conference. I also apply to be a volunteer.

On the five days conference, I saw many core-people of this field, such as BingRen, Lucy Shapiro, Sunny Xie , and a lot of young scientists. they are creative and passionate people. What I learned from them are keep thinking, keep asking, keep working.

On next diary I will show you some interesting works on the conference.


I think creating github pages are not difficult, however when I realized that gp-pages are not a single branch it may belongs to a master branch. Problems are revealing.

I didn’t know how to create a Project Pages on a new folder. The following manual you may found on github.com. It said that, you may want to remove all files from the old working tree. But when you use the command, all file on your disk folder will be deleted ;(.

git rm -rf . # Remove all files from the old working tree

So please pay attention to the command if you have many files which didn’t want to be deleted.

####How to create a gh-pages without a master branch?#### This page will help you. Remember, using

git push origin :master

And using git push origin --delete gh-pages you can delete the gh-pages branch.


Today, I started the new blog on Github. All pages transferred from html to markdown.

This is a new start of my blog.

I use some css from the other’s blog. The most helpful jekyll blog are yihui.name, pingmygeek.com, huangzhimin.com and freemind.pluskid.org.

I use a label and a <q> tag from freemind.pluskid.org,

\[e^{i\pi}+1=0\]

Because some pages will write using \(\LaTeX\) (I don’t know why the five letters are too close one to another ), I change the Markdown processor from rdiscount to kramdown.

When using Mathjax, I should avoid highlight.css mixing between Mathjax and Pygments

pygmentize -S friendly -f html | sed 's/^/.highlight code /g' > assets/css/highlight.css

0000 – Install an Linux system on your computer.

0001 – Follow the 10000 things all ICS students should do before graduating

0010 – Learn Cell, Molecular Biology, Genomic, Genetics by yourself.

0011 – Learn Computational mathematics, Applied mathematics and Statistics.

0100 – Try create a bioinformatics tool. Belief in your ability.